About Daniel B. Raudabaugh
Email: raudaba2@illinois.edu
Title: Research Affiliate
ResearchGate: https://www.researchgate.net/profile/Daniel_Raudabaugh
Personal Information
Ph.D. – Plant Biology, University of Illinois Urbana-Champaign, USA.
M.S. – Plant Biology, University of Illinois Urbana-Champaign, USA.
B.S. – in Biology, Lock Haven University of Pennsylvania, USA.
Research Interest
Daniel is very passionate about how organisms interact with their environment and how the environment influences those interactions. His Ph.D. research was a multi-disciplinary project investigating contrasting freshwater fungal communities aimed at understanding the community composition, drivers of species distribution, and functional roles of each species. During his 2019 Schmidt Science postdoctoral fellowship at Duke University, he learned about the fate and environmental distribution of pollutants. He applied this knowledge to investigate the impact of polycyclic aromatic hydrocarbons on root-associated archaea, bacteria, and fungal communities of two widespread marsh plants (Phragmites australis and Spartina alterniflora), in addition to investigating the effects of various pesticides on aquatic fungal species.
Publications
Raudabaugh, D.B. and Aime, M.C., 2023. Culturable Diversity of Lichen-Associated Yeasts through Enrichment Strategies. Ecologies, 4(1), pp.152-170.
Raudabaugh, D.B., Ishida, Y., Haley, N.J., Brown, W.M., Novakofski, J., Roca, A.L. and Mateus-Pinilla, N.E., 2022. County-wide assessments of Illinois white-tailed deer (Odocoileus virginianus) prion protein gene variation using improved primers and potential implications for management. Plos one, 17(11), p.e0274640.
Gerhard, W.A., Raudabaugh, D.B., Rojas, J.A. and Gunsch, C.K., 2022. Evaluation of the mycobiome of ballast water and implications for fungal pathogen distribution. Aquatic Microbial Ecology, 88, pp.149-160.
Miller, A.N., Karakehian, J. and Raudabaugh, D.B., 2022. Next-Generation Sequencing of Ancient and Recent Fungarium Specimens. Journal of Fungi, 8(9), p.932.
Addis, S.D., Formel, S.K., Kim, Y.J., Varner, P.B., Raudabaugh, D.B., Lefevre, E., Bernik, B.M., Elango, V., Van Bael, S.A., Pardue, J.H. and Gunsch, C.K., 2022. Alterations of endophytic microbial community function in Spartina alterniflora as a result of crude oil exposure. Biodegradation, 33(1), pp.87-98.
Crous PW, Cowan DA, Maggs-Kölling G, Yilmaz N, Thangavel R, Wingfield MJ, Noordeloos ME, Dima B, Brandrud TE, Jansen GM, Morozova OV, Vila J, Shivas RG, Tan YP, Bishop-Hurley S, Lacey E, Marney TS, Larsson E, Le Floch G, Lombard L, Nodet P, Hubka V, Alvarado P, Berraf-Tebbal A, Reyes JD, Delgado G, Eichmeier A, Jordal JB, Kachalkin AV, Kubátová A, Maciá-Vicente JG, Malysheva EF, Papp V, Rajeshkumar KC, Sharma A, Sharma A, Spetik M, Szabóová D, Tomashevskaya MA, Abad JA, Abad ZG, Alexandrova AV, Anand G, Arenas F, Ashtekar N, Balashov S, Bañares Á, Baroncelli R, Bera I, Biketova A Yu, Blomquist CL, Boekhout T, Boertmann D, Bulyonkova TM, Burgess TI, Carnegie AJ, Cobo-Diaz JF, Corriol G, JCunnington JH, da Cruz MO, Damm U, Davoodian N, de A. Santiago ALCM, Dearnaley J, de Freitas LWS, Dhileepan K, Dimitrov R, Di Piazza S, Fatima S, Fuljer F, Galera H, Ghosh A, Giraldo A, Glushakova AM, Gorczak M, Gouliamova DE, Gramaje D, Groenewald M, Gunsch CK, Gutiérrez A, Holdom D, Houbraken J, Ismailov AB, Istel Ł, Iturriaga T, Jeppson M, Jurjević Ž, Kalinina LB, Kapitonov VI, Kautmanová I, Khalid AN, Kiran M, Kiss L, Kovács Á, Kurose D, Kušan I, Lad S, Læssøe T, Lee HB, Luangsa-ard JJ, Lynch M, Mahamedi AE, Malysheva VF, Mateos A, Matočec N, Mešić A, Miller AN, Mongkolsamrit S, Moreno G, Morte A, Mostowfizadeh-Ghalamfarsa R, Naseer A, Navarro-Ródenas A, Nguyen TTT, Noisripoom W, Ntandu JE, Nuytinck J, Ostrý V, Pankratov TA, Pawłowska J, Pecenka J, Pham THG, Polhorský A, Pošta A, Raudabaugh DB, Reschke K, Rodríguez A, Romero M, Rooney-Latham S, Roux J, Sandoval-Denis M, Smith Mth, Steinrucken TV, Svetasheva TY, Tkalčec Z, van der Linde EJ, Vegte Mvd, Vauras J, Verbeken A, Visagie CM, Vitelli JS, Volobuev SV, Weill A, Wrzosek M, Zmitrovich IV, Zvyagina EA, Groenewald JZ (2021) Exophiala spartinae, 460–461, in Fungal Planet description sheets: 1182–1283, Persoonia (46): 313–528, https://doi.org/10.3767/persoonia.2021.46.11
Raudabaugh DB, Wells DG, Matheny PB, Hughes KW, Sargent M, Iturriaga T, Miller AN (2021) In Vitro Observations of the Interactions between Pholiota carbonaria and Polytrichum commune and Its Potential Environmental Relevance. Life 11,518, https://doi.org/10.3390/life11060518
Raudabaugh DB, Bach EM, Allen JM, Miller AN (2021) Fungal communities of submerged fine detritus from temperate peatland and stream habitats. Aquatic Microbial Ecology 86:191-207, https://doi.org/10.3354/ame01969
Iturriaga T, Raudabaugh DB, Karakehian JM, Miller AN, Hodge KT, Pfister DH (2021) First collection of the asexual state of Trichaleurina javanica from nature and the placement of Kumanasamuha. Asian Journal of Mycology 4(1):19–28, DOI: 10.5943/ajom/4/1/3 [PDF]
Raudabaugh DB, Rivera NA, Anchor GC, Bach E, Miller AN, Mateus-Pinilla NE (2021) Preliminary study of cave sample storage conditions on fungal community diversity, Diversity 13,188. https://doi.org/10.3390/d13050188
Hughes KW, Matheny PB, Miller AN, Petersen RH, Teresa M. Iturriaga TM, Johnson KD, Methven AS , Raudabaugh DB, Swenie RA , Bruns TD (2020) Pyrophilous fungi detected after wildfires in the Great Smoky Mountains National Park expands known species ranges and biodiversity estimates, Mycologia, DOI: 10.1080/00275514.2020.1740381
Raudabaugh DB, Matheny PB, Hughes KW, Iturriaga TM, Sargent M, Miller AN (2020) Where are they hiding? Testing the body snatcher hypothesis in fire-associated fungi. Fungal Ecology, https://doi.org/10.1016/j.funeco.2019.100870
Crous PW, Carnegie AJ, Wingfield MJ, Sharma R, Mughini G, Noordeloos ME, Santini A, Shouche YS, Bezerra JDP, Dima B, Guarnaccia V, Imrefi I, Jurjević Ž, Knapp DG, Kovács GM, Magistà D, Perrone G, Rämä T, Rebriev YA, Shivas RG, Singh SM, Souza-Motta CM, Thangavel R, Adhapure NN, Alexandrova AV, Alfenas AC, Alfenas RF, Alvarado P, Alves AL, Andrade DA, Andrade JP, Barbosa RN, Barili A, Barnes CW, Baseia IG, Bellanger J-M, Berlanas C, Bessette AE, Bessette AR, Biketova AY, Bomfim FS, Brandrud TE, Bransgrove K, Brito ACQ, Cano-Lira JF, Cantillo T, Cavalcanti AD, Cheewangkoon R, Chikowski RS, Conforto C, Cordeiro TRL, Craine JD, Cruz R, Damm U, de Oliveira RJV, de Souza JT, de Souza HG, Dearnaley JDW, Dimitrov RA, Dovana F, Erhard A, Esteve-Raventós F, Félix, CR, Ferisin G, Fernandes RA, Ferreira RJ, Ferro LO, Figueiredo CN, Frank JL, Freire KTLS, García D, Gené J, Gęsiorska A, Gibertoni TB, Gondra RAG, Gouliamova DE, Gramaje D, Guard F, Gusmão LFP, Haitook S, Hirooka Y, Houbraken J, Hubka V, Inamdar A, Iturriaga T, Iturrieta-González I, Jadan M, Jiang N, Justo A, Kachalkin AV, Kapitonov VI, Karadelev M, Karakehian J, Kasuya T, Kautmanová I, Kruse J, Kušan I, Kuznetsova TA, Landell MF, Larsson K-H, Lee HB, Lima DX, Lira CRS, Machado AR, Madrid H, Magalhães OMC, Majerova H, Malysheva EF, Mapperson RR, Marbach PAS, Martín MP, Martín-Sanz A, Matočec N, McTaggart AR, Mello JF, Melo, RFR, MešićA, Michereff SJ, Miller AN, Minoshima A, Molinero-Ruiz L, Morozova OV, Mosoh D, Nabe M, Naik R, Nara K, Nascimento SS, Neves RP, Olariaga I, Oliveira RL, Oliveira TGL, Ono T, Ordoñez ME, de M Ottoni A, Paiva LM, Pancorbo F, Pant B, Pawłowska J, Peterson SW, Raudabaugh DB, Rodríguez-Andrade E, Rubio E, Rusevska K, Santiago ALCMA, Santos ACS, Santos C, Sazanova NA, Shah S, Sharma J, Silva BDB, Siquier JL, Sonawane MS, Stchigel AM, Svetasheva T, Tamakeaw N, Telleria MT, Tiago PV, Tian CM, Tkalčec Z, Tomashevskaya MA, Truong HH, Vecherskii MV, Visagie CM, Vizzini A, Yilmaz N, Zmitrovich IV, Zvyagina EA, Boekhout T, Kehlet T, Læssøe T, Groenewald JZ (2019) Meliola gorongosensis, 430–431, in Fungal Planet description sheets: 868–950, Persoonia (42): 291– 473, https://doi.org/10.3767/persoonia.2019.42.11
Crous PW, Wingfield MJ, Burgess TI, Hardy GEStJ, Gené J, Guarro J, Baseia IG, García D, Gusmão LFP, Souza-Motta CM, Thangavel R, Adamčík S, Barili A, Barnes CW, Bezerra JDP, Bordallo JJ, Cano-Lira JF, de Oliveira RJV, Ercole E, Hubka V, Iturrieta-González I, Kubátová A, Martín MP, Moreau P-A, Morte A, Ordoñez ME, Rodríguez A, Stchigel AM, Vizzini A, Abdollahzadeh J, Abreu VP, Adamčíková K, Albuquerque GMR, Alexandrova AV, Álvarez Duarte E, Armstrong-Cho C, Banniza S, Barbosa RN, Bellanger J-M, Bezerra JL, Cabral TS, Caboň M, Caicedo E, Cantillo T, Carnegie AJ, Carmo LT, Castañeda-Ruiz RF, Clement CR, Čmoková A, Conceição LB, Cruz RHSF, Damm U, da Silva BDB, da Silva GA, da Silva RMF, de A. Santiago ALCM, de Oliveira LF, de Souza CAF, Déniel F, Dima B, Dong G, Edwards J, Félix CR, Fournier J, Gibertoni TB, Hosaka K, Iturriaga T, Jadan M, Jany J-L, Jurjević Ž, Kolařík M, Kušan I, Landell MF, Leite Cordeiro TR, Lima DX, Loizides M, Luo S, Machado AR, Madrid H, Magalhães OMC, Marinho P, Matočec N, Mešić A, Miller AN, Morozova OV, Neves RP, Nonaka K, Nováková A, Oberlies NH, Oliveira-Filho JRC, Oliveira TGL, Papp V, Pereira OL, Perrone G, Peterson SW, Pham THG, Raja HA, Raudabaugh DB, Řehulka J, Rodríguez-Andrade E, Saba M, Schauflerová A, Shivas RG, Simonini G, Siqueira JPZ, Sousa JO, Stajsic V, Svetasheva T, Tan YP, Tkalčec Z, Ullah S, Valente P, Valenzuela-Lopez N, Abrinbana M, Viana Marques DA, Wong PTW, Xavier de Lima V, Groenewald JZ (2018) Hongkongmyces snookiorum, 288–289, in Fungal Planet description sheets: 716–784, Persoonia (40): 240–393, https://doi.org/10.3767/persoonia.2018.40.10
Wahl HE, Raudabaugh DB, Bach EM, Bone TS, Luttenton MR, Cichewicz RH, Miller AN (2018) What lies beneath? Fungal diversity at the bottom of Lake Michigan and Lake Superior, Journal of Great Lakes Research 44: 263-270, https://doi.org/10.1016/j.jglr.2018.01.001
Miller AN, Raudabaugh DB, Iturriaga T, Matheny TP, Petersen RH, Hughes KW, Gube M, Powers RA, James TY, O’Donnell K (2017) First report of the post-fire morel, Morchella exuberans, in eastern North America, Mycologia 109(5): 710–714, https://doi.org/10.1080/00275514.2017.1408294
Raudabaugh DB, Iturriaga T, Carver A, Mondo S, Pangilinan J, Lipzen A, He G, Amirebrahimi M, Grigoriev IV, Miller AN (2017) Coniella lustricola a new species from submerged detritus, Mycological Progress 17(1-2): 191–203, https://doi.org/10.1007/s11557-017-1337-6
Heads SW, Miller AN, Crane JL, Thomas MJ, Ruffatto DM, Methven AS, Raudabaugh DB, Wang Y (2017) The oldest fossil mushroom. PLOS ONE 13(6): https://doi.org/10.1371/journal.pone.0178327
Reynolds HT, Raudabaugh D, Lilje O, AllenderM, Miller AN, Gleason FH (2017) Emerging mycoses and fungus-like diseases of vertebrate wildlife. Dighton J, White J. In: The Fungal Community: its Organization and Role in the Ecosystem, Fourth Edition, CRC Press, 960 p.
Raudabaugh DB, Miller AN (2015) Effect of trans, trans-farnesol on Pseudogymnoascus destructans and several closely related species. Mycopathologia (5-6): 325–332, https://doi.org/10.1007/s11046-015-9921-2
Allender MC, Raudabaugh DB, Gleason FH, Miller AN (2015) The natural history, ecology, and epidemiology of Ophidiomyces ophiodiicola and its potential impact on free-ranging snake populations. Fungal Ecology 17: 187–196, https://doi.org/10.1016/j.funeco.2015.05.003
Raudabaugh DB, Miller AN (2014) Morphogenetic effect of L-cysteine on Pseudogymnoascus destructans and related species. Mycosphere 5(6): 737–746, http://www.mycosphere.org/pdf/Mycosphere_5_6_4.pdf
Raudabaugh DB, Miller AN (2013) Nutritional capability of and substrate suitability for Pseudogymnoascus destructans, the causal agent of bat white-nose syndrome. PLOS ONE 8(10): e78300, https://doi.org/10.1371/journal.pone.0078300
Raudabaugh DB, Tzolov MB, Calabrese JP, Overton BE (2013) Synthesis of silver nanoparticles by a bryophilous Rhizoctoniaspecies. Nanomaterials and Nanotechnology, Paola Prete (Ed.), ISBN: 1847-9804, InTech, https://doi.org/10.5772/56207
Raudabaugh DB, Overton BE, Zelski SE, Miller AN (2011) Pure culture response of bryophilous fungi to matric-induced water stress. Mycosphere 2(6): 656–667, http://www.mycosphere.org/pdf/MC2_6_No6.pdf