Jacob Jett: What Species is ‘Baby’? Anecdotes from Cleaning BioBERT Output Datasets for Synthetic Biology

Title: What Species is ‘Baby’? Anecdotes from Cleaning BioBERT Output Datasets for Synthetic Biology
Session Lead: Jacob Jett
Time: 10 am – 11 am (CDT), Thursday, 2022-04-14
Location: Zoom

Abstract

The context is that we created a metadata conversion and enrichment pipeline here for the Synthetic Biology Knowledge System. There are two aspects that we carry out here: 1) Conversion of ACS article-level JATS-XML metadata into SBOL RDF/XML metadata and 2) Enrichment of said metadata with normalized named entities.