Engineering at Illinois

Vida Ravanmehr

A publish.illinois.edu site

Publications

Preprints:

  • V. Ravanmehr,  G. J. Puleo, S. Bolouki, O. Milenkovic, “Doubly Threshold Graphs for Social Network Modeling”, Journal of Discrete Applied Mathematics (Submitted), Feb. 2017. arXiv:1603.09701.
  • V. Ravanmehr, M. Kim, Z. Wang, O. Milenkovic, “ChIPWig: A Random Access-Enabling Lossless and Lossy Compression Method  for ChIP-seq Data”, Bioinformatics (Submitted), Apr. 2017. doi: https://doi.org/10.1101/127464.

Journal Papers:

  • V. Ravanmehr, M. Khatami, D. Declercq, B. Vasic, “Check-hybrid GLDPC Codes: Systematic Elimination of Trapping Sets and Guaranteed Error Correction Capability,” Transactions on Emerging Telecommunications Technologies, vol.   27, no.  12, pp. 1679-1692, 2016.
  • V. Ravanmehr, L. Danjean, B. Vasic, D. Declercq, “Interval-passing Algorithms for Non-negative Measurement Matrices: Performance and Reconstruction Analysis,” IEEE J.  Emerg. and Selected Topics in Circ. and Systems, vol. 2, no. 3, pp. 424-432, Oct. 2012.
  • B. Vasic, V. Ravanmehr, A. R. Krishnan, “An Information Theoretic Approach to Constructing Robust Gene Regulatory Networks”, IEEE/ACM Trans. Comput. Biol. And Bioinfo. vol. 9, no. 1, pp. 52-65, Jan-Feb. 2012.
  • M. Esmaeili, V. Ravanmehr, “Two Classes of Optimal Stopping Redundancy Codes”, Ars Combinatoria, vol. 92, pp. 463-471, Jul. 2009.
  • M. Esmaeili, V. Ravanmehr, “Stopping Sets of Binary Parity-check Matrices with Constant Weight Columns and Stopping Redundancy of the Associated Codes”, Utilitas Mathematica, vol. 76, pp. 265-276, Jul. 2008.

 

Conference Papers:

  • V. Ravanmehr, S. Bolouki, G. J. Puleo, O. Milenkovic, “Doubly threshold graphs for social network modeling”,  Information Theory Workshop (ITW), Cambridge, UK, Sept. 2016.
  • Vasic, P. Ivanis, S. Brkic, V. Ravanmehr, “Fault-Resilient Decoders and Memories made of Unreliable Components” , in Proc. Inf. Theory and Appl. Workshop (ITA), San Diego, Feb. 1-6, 2015.
  • V. Ravanmehr, D. Declercq, B. Vasic, “Check-hybrid GLDPC codes: Systematic Elimination of Trapping Sets by Super Checks”, IEEE Int. Symp. Inf. Theory, pp. 701-705, Honolulu, June 28-July 4, 2014.
  • M. Khatami, V. Ravanmehr, B. Vasic, “GBP-based Detection and Symmetric Information Rate for Rectangular-grain TDMR Model”, IEEE Int. Symp. Inf. Theory, pp. 1618-1622, Honolulu, June 28-July 4, 2014.
  • V. Ravanmehr, D. Declercq, B. Vasic, “Check-hybrid GLDPC Codes without Small Trapping Sets”, Proc. Inf. Theory and Appl. Workshop (ITA), San Diego, pp. 1-9,  Feb. 9-14, 2014.
  • V. Ravanmehr, L. Danjean, B. Vasic, D. Declercq, “Signal Recovery Performance of the Interval-Passing Algorithm”, Proc. 7th Int. Symp. Turbo Codes and Iterative Inf. Process., pp. 106-110, Guthenburg, Sweden, Aug. 27-31, 2012.
  • V. Ravanmehr, B. Vasic, “Quasi-cyclic Codes Exhibiting the Gene Regulatory Network of the Cell Cycle”, IEEE Symp. Comput. Intelligence in Bioinf. And Comput. Biology (CIBCB), pp. 412-417, San Diego, May 9-12, 2012.
  • L. Danjean, V. Ravanmehr, D. Declercq, B. Vasic, “Iterative Reconstruction Algorithms in Compressed Sensing”, Proc. 19th Telecommun. Forum (TELFOR), Belgerade, Serbia, pp. 537-541, Nov. 22-24, 2011.
  • V. Ravanmehr, L. Danjean, D. Declercq, B. Vasic, “On Iterative Compressed Sensing Reconstruction of Sparse Non-negative Vectors”, Proc. 4th Int. Symp. Applied Sciences, Biomed. And Commun. Technologies (ISABEL), Barcelona, Spain, Oct. 26-29, 2011.
  • B. Vasic, V. Ravanmehr, D. W. Galbraith, “Analysis and Synthesis of Cell-cycle Gene Regulatory Network”, Proc. Inf. Theory and Appl. Workshop (ITA), San Diego, Feb. 6-11, 2011.

Poster Presentation:

  • V. Ravanmehr, Z. Wang, O. Milenkovic, “A state-of-the-art Compression Method for ChIP-seq data”, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, Oct. 26-29, 2016.
  • V. Ravanmehr, Z. Wang, O. Milenkovic, “ChIPWig: A stat-of-the-art Compression Method for ChIP-seq data”, Center for Computational Biotechnology and Genomic Medicine kickoff meeting, UIUC, Urbana, IL, Nov. 10,  2016
  • V. Ravanmehr, Z. Wang, O. Milenkovic, “ChIPWig: A stat-of-the-art Compression Method for ChIP-seq data”, Big Data to Knowledge (BD2K), All Hands meeting, National Institute of Health (NIH), Washington, D.C., Nov. 29-30,  2016.