Classical continuum models are often insufficient to predict the complex phenomena that emerge in the problems described above due their inherent multiscale nature. On the other hand, mesoscale and atomistic models have the potential to predict such phenomena, but often cannot extend into experimentally measurable spatial and temporal scales. Therefore, the material involved is modeled using a combination of a coarse scale model and a fine scale model. This modeling paradigm which is commonly referred to as multiscale modeling is playing an increasingly important role in scientific and industrial applications. The central theme of my research to date is to understand the link between the existing hierarchy of models, which is a precursor to developing robust multiscale methods.
Energetics of the nucleation and glide of disconnection modes in symmetric tilt grain boundaries [Link]




Grain boundaries (GBs) evolve by the nucleation and glide of disconnections, which are dislocations with a step character. In this work, motivated by recent success in predicting GB properties such as the shear coupling factor and mobility from the intrinsic properties of disconnections, we develop a systematic method to calculate the energy barriers for the nucleation and glide of individual disconnection modes under arbitrary driving forces. This method combines tools from bicrystallography to enumerate disconnection modes and the Nudged elastic band (NEB) method to calculate their energetics, yielding minimum energy paths and atomistic mechanisms for the nucleation and glide of each disconnection mode.
We apply the method to accurately predict shear coupling factors of [0 0 1] symmetric tilt grain boundaries in Cu. Particular attention is paid to the boundaries where the dislocation-based disconnection nucleation model produces incorrect nucleation barriers. We demonstrate that the method can accurately compute the energy barriers and predict the shear coupling factors for the low-temperature regime. In addition, the NEB trajectories reveal interesting phenomena such as the dissociation of a higher energy mode into lower energy modes, and in some cases, shear coupling being mediated by partial disconnections wherein the GB structure temporarily changes to a metastable state before reverting back to its original structure.
Quantifying Superlubricity of Bilayer Graphene from the Mobility of Interface Dislocations [Link]


Van der Waals (vdW) heterostructures subjected to interlayer twists or heterostrains demonstrate structural superlubricity, leading to their potential use as superlubricants in micro- and nanoelectromechanical devices. However, quantifying superlubricity across the vast four-dimensional heterodeformation space using experiments or atomic scale simulations is a challenging task. In this work, we develop two multiscale models to predict the interface friction drag coefficient of an arbitrarily heterodeformed bilayer graphene (BG) system — an atomistically informed dynamic Frenkel−Kontorova (DFK) model and a discrete dislocation (DD) model.
The DFK and DD models are motivated by molecular dynamics simulations of friction in heterodeformed BG. In particular, we note that interface dislocations formed during structural relaxation translate in unison when a heterodeformed BG is subjected to shear traction, leading us to the hypothesis that the kinetic properties of interface dislocations determine the friction drag coefficient of the interface. The constitutive law of the DFK model comprises the generalized stacking fault energy of the AB stacking, a scalar displacement drag coefficient, and the elastic properties of graphene, which are all obtained from atomistic simulations. Simulations of the DFK model confirm our hypothesis, since a single choice of the displacement drag coefficient, fitted to the kinetic property of an individual dislocation in an atomistic simulation, predicts interface friction in any heterodeformed BG. In addition, we develop a DD model to derive an analytical expression for the friction coefficient of heterodeformed BG. While the DD model is analytically tractable and numerically more efficient, the drag at dislocation junctions must be explicitly incorporated into the model. By bridging the gap between dislocation kinetics at the microscale and interface friction at the macroscale, the DFK and DD models enable a high-throughput investigation of strain-engineered vdW heterostructures.
Bicrystallography-informed Frenkel–Kontorova model for interlayer dislocations in strained 2D heterostructures [Link]


In recent years, van der Waals (vdW) heterostructures and homostructures, which consist of stacks of two-dimensional (2D) materials, have risen to prominence due to their association with exotic quantum phenomena originating from correlated electronic states harbored by them. Atomistic scale relaxation effects play an extremely important role in the electronic scale quantum physics of these systems, providing means of manipulation of these materials and allowing them to be tailored for emergent technologies. We investigate such structural relaxation effects in this work using atomistic and mesoscale models, within the context of twisted bilayer graphene — a well-known heterostructure system that features moiré patterns arising from the lattices of the two graphene layers. For small twist angles, atomic relaxation effects in this system are associated with the natural emergence of interface dislocations or strain solitons, which result from the cyclic nature of the generalized stacking fault energy (GSFE), that measures the interface energy based on the relative movement of the two layers. In this work, we first demonstrate using atomistic simulations that atomic reconstruction in bilayer graphene under a large twist also results from interface dislocations, although the Burgers vectors of such dislocations are considerably smaller than those observed in small-twist systems.
To reveal the translational invariance of the heterointerface responsible for the formation of such dislocations, we derive the translational symmetry of the GSFE of a 2D heterostructure using the notions of coincident site lattices (CSLs) and displacement shift complete lattices (DSCLs). The workhorse for this exercise is a recently developed Smith normal form bicrystallography framework. Next, we construct a bicrystallography-informed and frame-invariant Frenkel–Kontorova model, which can predict the formation of strain solitons in arbitrary 2D heterostructures, and apply it to study a heterostrained, large-twist bilayer graphene system. Our mesoscale model is found to produce results consistent with atomistic simulations.
Statistics of grain microstructure evolution under anisotropic grain boundary energies and mobilities using threshold-dynamics [Link]

This paper investigates the statistical behavior of two-dimensional grain microstructures during grain growth under anisotropic grain boundary characters. We employ the threshold-dynamics method, which allows for unparalleled computational speed, to simulate the full- field curvature motion of grain boundaries in a large polycrystal ensemble.
Two sets of numerical experiments are performed to explore the effect of grain boundary anisotropy on the evolution of microstructure features. In the first experiment, we focus on abnormal grain growth and find that grain boundary anisotropy introduces a statistical preference for certain grain orientations. This leads to changes in the overall grain size distribution from the isotropic case. In the second experiment, we examine the texture development and growth of twin grain boundaries at different initial microstructures. We find that both phenomena are more pronounced when the initial microstructure has a dominant fraction of high-angle grain boundaries. Our results suggest effective grain boundary engineering strategies for improving material properties.
Interface dislocations and grain boundary disconnections using Smith normal bicrystallography [Link]

The CSL/DSCL model for interfaces in crystalline materials offers a unified framework to study interface dislocation in phase boundaries and disconnections in grain boundaries. The model relies on the existence of a coincidence relation between the two lattices that meet at an interface. The model’s ability to quantitatively predict the thermodynamics and kinetics of interfaces has been demonstrated for a limited set of symmetric tilt grain boundaries (STGBs) in cubic materials and twin boundaries. However, the lack of a general framework of interface defects prevents its applicability to arbitrary rational boundaries. In this paper, we present a mathematical framework based on the Smith normal form (SNF) for integer matrices to study the bicrystallography of rational phase and grain boundaries. One of the main results of the paper is constructive proof of the invariance of the coincident site lattice (CSL) under discrete relative displacements of the parent lattices (of a possibly different kind) by a displacement shift complete lattice (DSCL) vector. In addition, we obtain necessary and sufficient conditions on two lattices, related by not only rotations but also lattice distortions, for the existence of a coincidence relation.
We first apply these results to explore coincidence relations in arbitrary phase boundaries, and study interface dislocations. In particular, we demonstrate the framework for a phase boundary formed by a strained hexagonal lattice and a square lattice. As a second application, we show how to enumerate all possible (geometric) disconnection modes in arbitrary rational grain boundaries, including glide and non-glide modes in both STGBs and asymmetric-tilt grain boundaries (ATGBs). The constructive nature of the framework lends itself to an algorithmic implementation based exclusively on integer matrix algebra to construct all interfaces that admit CSLs up to a prescribed size, and determine disconnection modes in grain boundaries. We demonstrate the use of SNF bicrystallography on selected bicrystal misorientation axes/angles in face-centered cubic (fcc), body-centered cubic (bcc), and hexagonal (hex) lattices.
Interface mechanics of 2D materials on metal substrates [Link]
The first column shows AFM images from experiments. Formation of straight (top row) and hatched (bottom row) facets with the grey scale representing the out-of-plane displacement from the flat initial surface in μm.




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The chemical vapor deposition (CVD) of graphene on metal substrate serves as a robust method tosynthesize high quality graphene flakes. Therefore, understanding the thermodynamics and kineticsof graphene-metal interface is an important step towards synthesizing high quality graphene duringCVD. The focus of this paper is on the phenomenon of surface reconstruction of a metal substrateduring the deposition of a 2D material.
Key features of surface reconstruction include the formationof straight and pyramidal facets of size∼100 nmin width and∼10 nmin height. In addition,discontinuities in facet directions under a single graphene flake distributed over two grains highlightthe strong crystallographic influence on surface reconstruction.In this paper, we present an atomistically informed continuum model of a graphene-metal in-terface in three dimensions. Graphene is modeled as an elastic surface that is in contact with arigid metal substrate. Due to the weak van der Waals interaction between graphene and metal, thekinematics of the model incorporates sliding of graphene. However, since we assume that grapheneis always in contact with the substrate, its normal displacement is mediated by surface diffusion ofmetal atoms. Based on evidence from recent molecular dynamics simulations and experiments, wemodel the interfacial energy to include in-plane elasticity and bending energy of graphene, and aninteraction energy that depends on the orientation of graphene relative to the substrate. We comparethe predictions of our model with surface reconstructions observed during the CVD of graphene onforged thin film palladium polycrystals. As we continue to unravel the atomic scale mechanismsresponsible for surface reconstruction during CVD, we expect the current continuum frameworkand its generalizations will serve to bridge the atomic- and the meso-scales.
Polycrystal plasticity and grain boundary evolution: A unified dislocation-based diffuse-interface approach [Link]
Change in crystal orientation and displacement arrow surface plot (left) With no external load, (right) With applied displacement boundary conditions. Rotation of grains 1, 2, 5 is hindered, while rotation of grain 3 is enhanced in the presence of loads


Grain structure plays a key role in the mechanical properties of alloy materials. Engineering the grain structure requires a comprehensive understanding of the evolution of grain boundaries (GBs) when a material is subjected to various manufacturing processes. To this end, we present a computationally efficient framework to describe the co-evolution of bulk plasticity and GBs. We represent GBs as diffused geometrically necessary dislocations, whose evolution describes GB plasticity. Under this representation, the evolution of GBs and bulk plasticity is described in unison using the evolution equation for the plastic deformation gradient, an equation central to classical crystal plasticity theories. To reduce the number of degrees of freedom, we present a procedure which combines the governing equations for each slip rates into a set of governing equations for the plastic deformation gradient. Finally, we outline a method to introduce a synthetic potential to drivemigration of a flat GB.
A fast and efficient thresholding algorithm to simulate grain growth in polycrystalline materials [Link]

One of the most important aims of grain boundary modeling is to predict the evolution of a large collection of grains in phenomena such as abnormal grain growth, coupled grain boundary motion, and recrystallization that occur under extreme thermomechanical loads. A unified framework to study the coevolution of grain boundaries with bulk plasticity has recently been developed by Admal [2018], which is based on modeling grain boundaries as continuum dislocations governed by an energy based on the Kobayashi–Warren–Carter (KWC) model (Kobayashi et al, 1998). While the resulting unified model demonstrates coupled grain boundary motion and polygonization (seen in recovery), the implementation of the unified model using finite elements inherits the computational challenges of the KWC model that originate from the singular diffusive nature of its governing equations. In this work, we develop a thresholding method that relies on a primal dual algorithm and the fast marching method, resulting in an \(\mathcal O(N \log N)\) algorithm, where \(N\) is the number of grid points.
We validate the model by demonstrating the Herring angle and the von Neumann–Mullins relations as shown in the figure on the left. In addition, we also generalize the KWC model, which was originally restricted to grain boundary energies of the Read–Shockley type, to incorporate grain boundary energies that respect the bicrystallography of grain boundaries. This allows us to study grain microstructure evolution in a two-dimensional face-centered cubic copper polycrystal with crystal symmetry-invariant grain boundary energy
Recrystallization in refractory materials
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The aim of this project is to overcome the above stated limitations and model microstructure evolution within a unified framework. In this work, we develop a thermodynamically-consistent model by generalizing the framework of crystal plasticity to polycrystalline materials, and endow the model with grain boundary energy to model grain evolution. We demonstrate that the model can simulate a wide variety of phenomena such as grain nucleation, rotation, shrinking, and shear-induced grain boundary sliding and coupling motions.
Most models developed in the last two decades to study recovery, recrystallization and grain growth have employed the phase field method, and do not model the entire problem in a unified framework. More importantly, they do not model the underlying plastic deformation/shape change that accompanies grain boundary motion. Therefore, phenomena such as dynamic grain nucleation and shear induced grain boundary motion, which play an important role during recrystallization, are beyond the reach of these models.
Atomistic repsresentation of strain gradient elastic tensors
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In this project, we give a rigorous derivation of formulas for gradient elastic constants as explicit functions of potential energy and the geometry of the crystal. This work establishes a direct relationship between the microstructure and the macroscopic elastic constants, thus resulting in a powerful tool to engineer the microstructure.
Stain gradient elasticity (SGE), proposed by Mindlin [1964], is a generalization of classical elasticity to include intrinsic length scales through the dependence of the energy density on strain and its gradient. In other words, SGE includes corrections to the energy corresponding to deformation modes that correspond to strain gradients. The above figure shows such deformation modes in a cubic crystal. Despite its potential, SGE has not gained traction in the engineering community primarily due to the following two issues. First, due to the large number of elastic constants, the theory appears to lack the simplicity of classical elasticity. Second, due to the lack of an explicit relationship between the elastic constants and the underlying atomistic structure, multiscale models that involve gradient elasticity have not been developed.
A discrete Helhmholtz Hodge-type decompsition of the atomsitic stress tensor
A central feature of all multiscale methods that involve atomistic and continuum models is the transfer of information between the two models. Information in the continuum model is encoded in the form of continuum fields like energy density, stress, and heat flux, while the information in the atomistic region is in the form of positions and velocities of particles, and atomic forces. In order to transfer information between the two models, definitions for various continuum fields are constructed for the discrete atomistic system. Of all the continuum fields, the stress field for an atomistic system has been a subject of great debate. This is largely due to the existence of numerous and apparently disparate microscopic definitions for stress in the literature. As part of my doctoral thesis, I identified the Irving–Kirkwood (IK) framework as a unified framework and derived existing stress definitions as special cases.
In addition, I have proposed new definitions for the energy density and the heat flux vector. These definitions avoid the ambiguous decomposition of energy among particles present in the original IK framework. Additionally, in our study of the non-uniqueness of the atomistic stress tensor, we derived a discrete analog of the Helmholtz decomposition for symmetric stress tensors. The above figure shows the decomposition of the yy-component of the Cauchy stress in a plate with a hole, subjected to uniaxial loading under plane strain conditions. The discrete decomposition of the atomistic stress tensor has potential applications in identifying various defect structures in amorphous materials. On the other hand, the conventional Helmholtz decomposition, which is extensively used in fluid mechanics to identify various features such as vortices and critical points of fluid flow, can also be used for feature detection. Since the discrete decomposition proposed in this work includes the geometry and discreteness of the crystal, it results in a superior resolution of defects compared to the resolution obtained using conventional Helmholtz decomposition.






