Jed Chou, Ashu Gupta, Shashank Yaduvanshi, Ruth Davidson, Michael Nute, Siavash Mirarab, Tandy Warnow “A comparative study of SVDquartets and other coalescent-based species tree estimation methods”RECOMB-Comparative Genomics and BMC Genomics. 2015.., 2015, 16 (Suppl 10): S2
 N. Nguyen, M. Nute, S. Mirarab, and T. Warnow (2016). HIPPI: Highly accurate protein family classification with ensembles of HMMs. BMC Genomics 17 (Suppl 10):765, special issue for RECOMB-CG.
 M. Nute and T. Warnow (2016). Scaling statistical multiple sequence alignment to large datasets. BMC Genomics 17(Suppl 10): 764, special issue for RECOMB-CG.