2020 Schedule

June 8-12, 2020

Please familiarize yourself with the programs we will be using in this course. Tutorials are below.

The 2020 course is virtual. Classes are held from 8:30 AM to 5:00 PM (central time).

8:30 – 10:30AM 10:45AM – 12:15PM 12:15 – 1:15PM 1:15 – 3:15PM 3:30 – 5:00PM
06/08
Mon
Statistics (lecture + lab) 
Dave Zhao
Lab set-up
UNIX  Lab
Lunch Break Genome Assembly
Chris Fields
Genome Assembly Lab
06/09
Tue
Variant Calling
Chris Fields
Variant Calling Lab
Lunch Break RNA-Seq & Transcriptome Analysis
Jessica Holmes
RNA-Seq Lab

 

06/10
Wed
Epigenomics
Saurabh Sinha
Epigenomics Lab

Lunch Break Regulatory Genomics
Saurabh Sinha
Regulatory
Genomics Lab

06/11
Thu
Introduction to Systems Biology I
Charles Blatti
Systems Biology
Lab I
Lunch Break Introduction to Systems Biology II
Charles Blatti
Systems Biology
Lab II
06/12
Fri
Polymorphisms & Association Tests
Matt Hudson
Polymorphisms & Association Tests  Lab
Lunch Break Cancer Informatics
Krishna Rani Kalari
(Mayo Clinic)
Bioinformatics of DNA methylation
Garrett Jenkinson
(Mayo Clinic)
15-minute breaks will be given daily at 10:30 AM and 3:15 PM between the lectures and computer labs.

Lab Exercises Data

 


Pre-Course Tutorials

Please spend some time familiarizing yourself with the programs we will be using in the course.

RStudio: http://tryr.codeschool.com/ ; http://www.r-tutor.com/r-introduction
Linux/Unix (Tutorial One and Tutorial Two): http://www.ee.surrey.ac.uk/Teaching/Unix/
KnowEnG: https://knoweng.org/analyze/

https://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.3000583