June 10 – 14, 2019
Please familiarize yourself with the programs we will be using in this course. Tutorials are below.
The 2020 course is virtual. Classes are held from 8:30 AM to 5:00 PM (central time).
| 8:30 – 10:30AM | 10:45AM – 12:15PM | 12:15 – 1:15PM | 1:15 – 3:15PM | 3:30 – 5:00PM | |
| 06/10 Mon |
Genome Assembly Chris Fields pptx pdf |
UNIX Lab Genome Assembly Lab Shounak Bhogale pptx pdf |
Lunch | Variant Calling Chris Fields pptx pdf |
Variant Calling Lab Shounak Bhogale pptx pdf |
| 06/11 Tue |
Statistics (lecture + lab) Dave Zhao pptx pdf R Script |
Galaxy Lab Shounak Bhogale pptx pdf |
Lunch | RNA-Seq & Transcriptome Analysis Jessica Holmes pptx pdf |
RNA-Seq Lab Shounak Bhogale pptx pdf |
| 06/12 Wed |
Epigenomics Lisa Stubbs pptx pdf |
Epigenomics Lab Shounak Bhogale pptx pdf |
Lunch | Regulatory Genomics Saurabh Sinha pptx pdf |
Regulatory Genomics Lab Shounak Bhogale pptx pdf |
| 06/13 Thu |
Introduction to Systems Biology I Charles Blatti pptx(zip) pdf |
Systems Biology Lab I Charles Blatti pptx pdf data |
Lunch | Introduction to Systems Biology II Charles Blatti pptx pdf |
Systems Biology LabII Charles Blatti pptx pdf data |
| 06/14 Fri |
Polymorphisms & Association Tests Saurabh Sinha pptx pdf |
Polymorphisms & Association Tests Lab Shounak Bhogale pptx pdf |
Lunch | Cancer Informatics Krishna Rani Kalari (Mayo Clinic) pptx pdf |
Microbiome Analysis Nicholas Chia (Mayo Clinic) pptx pdf |
15-minute breaks will be given daily at 10:30 AM and 3:15 PM between the lectures and computer labs.
Lab Exercises Data
Pre-Course Tutorials
Please spend some time familiarizing yourself with the programs we will be using in the course.
RStudio: http://tryr.codeschool.com/ ; http://www.r-tutor.com/r-introduction
Linux/Unix (Tutorial One and Tutorial Two): http://www.ee.surrey.ac.uk/Teaching/Unix/
Galaxy Server: https://galaxyproject.org/tutorials/g101/
Link to install R: R
Link to install RStudio: RStudio (Needs R to already be installed)