| Cover | Year | Publication |
|---|---|---|
 | 2019 | Title: Comparison of single and module-based methods for modeling gene regulatory networks. Authors: Hernaez, Blatti, and Gevaert. Links: Pubmed |
 | 2019 | Title: Draft genome assembly and population genetics of an agricultural pollinator, the solitary alkali bee. Authors: Kapheim, Pan, Li, Blatti, Harpur, Ioannidis, Jones, Kent, Ruzzante, Sloofman, Stolle, Waterhouse, Zayed, Zhang, Wcislo. Links: Pubmed |
 | 2018 | Title: Cross-species systems analysis of evolutionary toolkits of neurogenomic response to social challenge. Authors: Saul, Blatti, Yang, Bukhari, Shpigler, Troy, Seward, Sloofman, Chandrasekaran, Bell, Stubbs, Robinson, Zhao, Sinha. Links: Pubmed |
 | 2018 | Title: SigMat: a classification scheme for gene signature matching. Authors: Xiao, Blatti, Sinha. Links: Pubmed / GitHub Repo |
 | 2016 | Title: Characterizing gene sets using discriminative random walks with restart on heterogeneous biological networks. Authors: Blatti, Sinha. Links: Pubmed / GitHub Repo / CRAN Package |
 | 2015 | Title: Genomic signatures of evolutionary transitions from solitary to group living. Authors: Kapheim, Pan, Li, Salzberg, Puiu, Magoc, Robertson, Hudson, Venkat, Fischman, Hernandez, Yandell, Ence, Holt, Yocum, Kemp, Bosch, Waterhouse, Zdobnov, Stolle, Kraus, Helbing, Moritz, Glastad, Hunt, Goodisman, Hauser, Grimmelikhuijzen, Pinheiro, Nunes, Soares, Tanaka, Simoes, Hartfelder, Evans, Barribeau, Johnson, Massey, Southey, Hasselmann, Hamacher, Biewer, Kent, Zayed, Blatti, Sinha, Johnston, Hanrahan, Kocher, Wang, Robinson, and Zhang. Links: Pubmed |
 | 2015 | Title: Integrating motif, DNA accessibility and gene expression data to build regulatory maps in an organism. Authors: Blatti*, Kazemian, Wolfe, Brodsky, and Sinha. Links: Pubmed / Supplemental Website |
 | 2014 | Title: Core and region-enriched networks of behaviorally regulated genes and the singing genome. Authors: Whitney, Pfenning, Howard, Blatti, Liu, Ward, Wang, Audet, Kellis, Mukherjee, Sinha, Hartemink, West, and Jarvis. Links: Pubmed |
 | 2014 | Title: Motif enrichment tool. Authors: Blatti*, and Sinha. Links: Pubmed / Webtool |
 | 2013 | Title: Global analysis of Drosophila Cys2-His2 zinc finger proteins reveals a multitude of novel recognition motifs and binding determinants. Authors: Enuameh, Asriyan, Richards, Christensen, Hall, Kazemian, Zhu, Pham, Cheng, Blatti, Brasefield, Basciotta, Ou, McNulty, Zhu, Celniker, Sinha, Stormo, Brodsky, and Wolfe. Links: Pubmed |
 | 2013 | Title: Computational identification of diverse mechanisms underlying transcription factor-DNA occupancy. Authors: Cheng, Kazemian, Pham, Blatti, Celniker, Wolfe, Brodsky, and Sinha. Links: Pubmed |
 | 2012 | Title: Transcriptional regulation of brain gene expression in response to a territorial intrusion. Authors: Sanogo, Band, Blatti, Sinha, and Bell. Links: Pubmed |
 | 2012 | Title: New meta-analysis tools reveal common transcriptional regulatory basis for multiple determinants of behavior. Authors: Ament*, Blatti*, Alaux, Wheeler, Toth, Le Conte, Hunt, Guzman-Novoa, Degrandi-Hoffman, Uribe-Rubio, Amdam, Page, Rodriguez-Zas, Robinson, and Sinha. Links: Pubmed / Software |
 | 2012 | Title: The transcription factor ultraspiracle influences honey bee social behavior and behavior-related gene expression. Authors: Ament, Wang, Chen, Blatti, Hong, Liang, Negre, White, Rodriguez-Zas, Mizzen, Sinha, Zhong, and Robinson. Links: Pubmed |
 | 2011 | Title: Reptiles and Mammals Have Differentially Retained Long Conserved Noncoding Sequences from the Amniote Ancestor. Authors: Janes, Chapus, Gondo, Clayton, Sinha, Blatti, Organ, Fujita, Balakrishnan, and Edwards. Links: Pubmed |
 | 2010 | Title: The genome of a songbird. Authors: Warren, Clayton, Ellegren, Arnold, Hillier, Kunstner, Searle, White, Vilella, Fairley, Heger, Kong, Ponting, Jarvis, Mello, Minx, Lovell, Velho, Ferris, Balakrishnan, Sinha, Blatti, London, Li, Lin, George, Sweedler, Southey, Gunaratne, Watson, Nam, Backstrom, Smeds, Nabholz, Itoh, Whitney, Pfenning, Howard, Volker, Skinner, Griffin, Ye, McLaren, Flicek, Quesada, Velasco, Lopez-Otin, Puente, Olender, Lancet, Smit, Hubley, Konkel, Walker, Batzer, Gu, Pollock, Chen, Cheng, Eichler, Stapley, Slate, Ekblom, Birkhead, Burke, Burt, Scharff, Adam, Richard, Sultan, Soldatov, Lehrach, Edwards, Yang, Li, Graves, Fulton, Nelson, Chinwalla, Hou, Mardis, and Wilson. Links: Pubmed |
 | 2010 | Title: Quantitative analysis of the Drosophila segmentation regulatory network using pattern generating potentials. Authors: Kazemian*, Blatti*, Richards, McCutchan, Wakabayashi-Ito, Hammonds, Celniker, Kumar, Wolfe, Brodsky, and Sinha. Links: Pubmed / Supplemental Website |
 | 2010 | Title: Thermodynamics-based models of transcriptional regulation by enhancers: the roles of synergistic activation, cooperative binding and short-range repression. Authors: Xin, Samee, Blatti, Sinha Links: Pubmed |