**A. Emad**, T. Ray, T. W. Jensen, M. Parat, R. Natrajan, S. Sinha, and P. S. Ray, “An epithelial-mesenchymal-amoeboid transition gene signature reveals molecular subtypes of breast cancer progression and metastasis,”**A. Emad**, J. Cairns, K. R. Kalari, L. Wang, and S. Sinha, “Knowledge-guided gene prioritization reveals new insights into the mechanisms of chemoresistance,”*Genome Biology*, 18(1), 153, 2017.- S. Tabe Bordbar*,
**A. Emad***, S. D. Zhao, S. Sinha, “A closer look at cross-validation approaches for assessing the accuracy of gene regulatory networks and models”, submitted, 2017. to appear in (Nature) Scientific Reports,***Contributed equally** - D. M. Malioutov, K. R. Varshney,
**A. Emad**, and S. Dash, “Learning Interpretable Classification Rules with Boolean Compressed Sensing,” in*Transparent Data Mining for Big and Small Data*, Studies in Big Data 11, Springer, 2017, pp. 95-121. - J. P. Hou*,
**A. Emad***, G. J. Puleo, J. Ma, and O. Milenkovic, “A new correlation clustering method for cancer mutation analysis*,*”*Bioinformatics*, 32 (24), pp. 3717-3728, 2016.***Contributed equally** **A. Emad**and O. Milenkovic, “Code Construction and Decoding Algorithms for Semi-Quantitative Group Testing with Nonuniform Thresholds,”*IEEE Trans. Inf. Theory*, vol. 62, pp. 1674-1687, 2016.**A. Emad**, K. R. Varshney, and D. Malioutov, “Learning Interpretable Clinical Prediction Rules using Threshold Group Testing,”*NIPS Workshop on Machine Learning in Healthcare*, 2015.**A. Emad**and O. Milenkovic, “Poisson Group Testing: A Probabilistic Model for Boolean Compressed Sensing,”*IEEE Trans. Signal Proc.*, vol. 63, pp. 4396-4410, 2015.- A. Emad, K. R. Varshney, and D. Malioutov, “A Semiquantitative Group Testing Approach for Learning Interpretable Clinical Prediction Rules,”
*Signal Processing with Adaptive Sparse Structured Representations (SPARS’15), 2015.* **A. Emad**and O. Milenkovic, “Semiquantitative Group Testing,”*IEEE Trans. Inf. Theory*, vol. 60, pp. 4614-4636, 2014.**A. Emad**and O. Milenkovic, “Group Testing for Non-Uniformly Quantized Adder Channels,”July 2014, pp. 2351-2355.*Proc*.*IEEE*,*Int. Symp. Inf. Theory*(ISIT’14)**A. Emad**and O. Milenkovic, “Poisson Group Testing: A Probabilistic Model for Nonadaptive Streaming Boolean Compressed Sensing,”*Proc.**IEEE Int. Conf. Acoustics, Speech, and Signal Processing (ICASSP’14),*2014, pp. 3335-3339.- M. Kim, J. G. Ligo,
**A. Emad**, F. Farnoud (Hassanzadeh), O. Milenkovic, V. V. Veeravalli, “MetaPar: Metagenomic Sequence Assembly via Iterative Reclassification,”*Proc. IEEE GlobalSIP,*2013 pp 43-46*.* - J. G. Ligo, M. Kim,
**A. Emad**, O. Milenkovic, V. V. Veeravalli, “MCUIUC – A New Framework for Metagenomic Read Compression,”*Proc.**IEEE**Inf. Theory Workshop (ITW’13)*, 2013. **A. Emad**and O. Milenkovic, “CaSPIAN: A Causal Compressive Sensing Algorithm for Discovering Directed Interactions in Gene Networks,”*PLOS ONE*, vol. 9, no. 3, e90781, March 2014. doi:10.1371/journal.pone.0090781.**A. Emad**and O. Milenkovic, “Compression of Noisy Signals with Information Bottlenecks,”*Proc.**IEEE**Inf. Theory Workshop (ITW’13)*, 2013.- P. Johnstone,
**A. Emad,**O. Milenkovic, and P. Moulin, “RFIT: A New Algorithm for Matrix Rank Minimization,”*Signal Processing with Adaptive Sparse Structured Representations (SPARS’13)*, 2013. - M. Deng,
**A. Emad**and O. Milenkovic, “Causal Compressive Sensing for Gene Network Inference,”*Proc*.*IEEE**Statistical Signal Processing**Workshop**(SSP’12)*, Aug. 2012, pp. 696 – 699. **A. Emad**and O. Milenkovic, “Semi-quantitative Group Testing,”*Proc*.*IEEE*, July 2012, pp. 1847 – 1851.*Int. Symp. Inf. Theory*(ISIT’12)**A. Emad**and O. Milenkovic, “Information Theoretic Bounds for Tensor Rank Minimization over Finite Fields,”*Proc.**IEEE Global Commun. Conf. (Globecom’11)*, Dec. 2011, pp. 1-5.**A. Emad**and N. C. Beaulieu, “On the Performance of an Automatic Frequency Control Loop in Dissimilar Fading Channels in the Presence of Interference,”*IEEE Trans. Commun.*, vol. 59, pp. 3234-3239, Dec. 2011.**A. Emad**and O. Milenkovic, “Symmetric Group Testing and Superimposed Codes,”*Proc.**IEEE**Inf. Theory Workshop (ITW’11)*, Oct. 2011, pp. 20 – 24,**invited**.**A. Emad**and N. C. Beaulieu, “Lower Bounds to the Performance of Bit Synchronization for Bandwidth Efficient Pulse-Shaping,”*IEEE Trans. Commun.*, vol. 58, pp. 2789-2794, Oct. 2010.**A. Emad**, W. Dai, and O. Milenkovic, “Protein-Protein Interaction Prediction using Non-Linear Matrix Completion Methods,”*15*, March 2011.^{th}Int. Conf. Research Computational Molecular Biology (RECOMB’11)**A. Emad**and N. C. Beaulieu, “Performance of an AFC Loop in the Presence of a Single Interferer in a Fading Channel,”*IEEE Trans. Commun.*, vol. 58, pp. 3386-3391, Dec. 2010.**A. Emad**and N. C. Beaulieu, “On the Performance of Bit-Synchronizers in an ISI Channel and a Related Lower Bound,”*Proc. IEEE Global Commun. Conf. (Globecom’09)*, Dec. 2009, pp. 1-6.**A. Emad**and N. C. Beaulieu, “Mean Time to Loss of Lock and Average Switching Rate of an Automatic Frequency Control Loop with an Interferer and Noise in a Fading Channel,”*Proc. IEEE Int. Conf. Commun. (ICC’09)*, June 2009, pp. 1-6.**A. Emad**and N. C. Beaulieu, “Effect of a Cochannel Interferer on an Automatic Frequency Control Loop in Fading Channels,”*Proc. IEEE Wireless Commun. Netw. Conf. (WCNC’09)*, April 2009, pp. 1-6.**A. Emad**and N. C. Beaulieu, “Performance Measures of Automatic Frequency Control Corrupted by Interference and Fading in Dual Dissimilar Channels,”*Proc. IEEE 69*, April 2009, pp. 1-5.^{th}Veh. Technol. Conf. (VTC’09)**A. Emad**and M. B. Shamsollahi, “ECG Denoising Using M-Band Wavelet Transform”,*12*, Dec. 2005.^{th}Int. Conf. Biomed. Engin. (ICBME’05)