Publications

  • A. Emad, T. Ray, T. W. Jensen, M. Parat, R. Natrajan, S. Sinha, and P. S. Ray, “An epithelial-mesenchymal-amoeboid transition gene signature reveals molecular subtypes of breast cancer progression and metastasis,” bioRxiv 219410; doi: https://doi.org/10.1101/219410.
  • A. Emad, J. Cairns, K. R. Kalari, L. Wang, and S. Sinha, “Knowledge-guided gene prioritization reveals new insights into the mechanisms of chemoresistance,” Genome Biology, 18(1), 153, 2017.
  • S. Tabe Bordbar*, A. Emad*, S. D. Zhao, S. Sinha, “A closer look at cross-validation approaches for assessing the accuracy of gene regulatory networks and models”, submitted, 2017. to appear in (Nature) Scientific Reports, bioRxiv 190157; doi: 10.1101/190157 *Contributed equally
  • D. M. Malioutov, K. R. Varshney, A. Emad, and S. Dash, “Learning Interpretable Classification Rules with Boolean Compressed Sensing,” in Transparent Data Mining for Big and Small Data, Studies in Big Data 11, Springer, 2017, pp. 95-121.
  • J. P. Hou*, A. Emad*, G. J. Puleo, J. Ma, and O. Milenkovic, “A new correlation clustering method for cancer mutation analysis,” Bioinformatics, 32 (24), pp. 3717-3728, 2016. *Contributed equally
  • A. Emad and O. Milenkovic, “Code Construction and Decoding Algorithms for Semi-Quantitative Group Testing with Nonuniform Thresholds,” IEEE Trans. Inf. Theory, vol. 62, pp. 1674-1687, 2016.
  • A. Emad, K. R. Varshney, and D. Malioutov, “Learning Interpretable Clinical Prediction Rules using Threshold Group Testing,” NIPS Workshop on Machine Learning in Healthcare, 2015.
  • A. Emad and O. Milenkovic, “Poisson Group Testing: A Probabilistic Model for Boolean Compressed Sensing,” IEEE Trans. Signal Proc., vol. 63, pp. 4396-4410, 2015.
  • A. Emad, K. R. Varshney, and D. Malioutov, “A Semiquantitative Group Testing Approach for Learning Interpretable Clinical Prediction Rules,” Signal Processing with Adaptive Sparse Structured Representations (SPARS’15), 2015. 
  • A. Emad and O. Milenkovic, “Semiquantitative Group Testing,” IEEE Trans. Inf. Theory, vol. 60, pp. 4614-4636, 2014.
  • A. Emad and O. Milenkovic, “Group Testing for Non-Uniformly Quantized Adder Channels,” Proc. IEEE Int. Symp. Inf. Theory (ISIT’14), July 2014, pp. 2351-2355.
  • A. Emad and O. Milenkovic, “Poisson Group Testing: A Probabilistic Model for Nonadaptive Streaming Boolean Compressed Sensing,” Proc. IEEE Int. Conf. Acoustics, Speech, and Signal Processing (ICASSP’14), 2014, pp. 3335-3339.
  • M. Kim, J. G. Ligo, A. Emad, F. Farnoud (Hassanzadeh), O. Milenkovic, V. V. Veeravalli, “MetaPar: Metagenomic Sequence Assembly via Iterative Reclassification,” Proc. IEEE GlobalSIP, 2013 pp 43-46.
  • J. G. Ligo, M. Kim, A. Emad, O. Milenkovic, V. V. Veeravalli, “MCUIUC – A New Framework for Metagenomic Read Compression,” Proc. IEEE Inf. Theory Workshop (ITW’13), 2013.
  • A. Emad and O. Milenkovic, “CaSPIAN: A Causal Compressive Sensing Algorithm for Discovering Directed Interactions in Gene Networks,” PLOS ONE, vol. 9, no. 3, e90781, March 2014. doi:10.1371/journal.pone.0090781.
  • A. Emad and O. Milenkovic, “Compression of Noisy Signals with Information Bottlenecks,” Proc. IEEE Inf. Theory Workshop (ITW’13), 2013.
  • P. Johnstone, A. Emad, O. Milenkovic, and P. Moulin, “RFIT: A New Algorithm for Matrix Rank Minimization,” Signal Processing with Adaptive Sparse Structured Representations (SPARS’13), 2013.
  • M. Deng, A. Emad and O. Milenkovic, “Causal Compressive Sensing for Gene Network Inference,” Proc. IEEE Statistical Signal Processing Workshop (SSP’12), Aug. 2012, pp. 696 – 699.
  • A. Emad and O. Milenkovic, “Semi-quantitative Group Testing,” Proc. IEEE Int. Symp. Inf. Theory (ISIT’12), July 2012, pp. 1847 – 1851.
  • A. Emad and O. Milenkovic, “Information Theoretic Bounds for Tensor Rank Minimization over Finite Fields,” Proc. IEEE Global Commun. Conf. (Globecom’11), Dec. 2011, pp. 1-5.
  • A. Emad and N. C. Beaulieu, “On the Performance of an Automatic Frequency Control Loop in Dissimilar Fading Channels in the Presence of Interference,” IEEE Trans. Commun., vol. 59, pp. 3234-3239, Dec. 2011.
  • A. Emad and O. Milenkovic, “Symmetric Group Testing and Superimposed Codes,” Proc. IEEE Inf. Theory Workshop (ITW’11), Oct. 2011, pp. 20 – 24, invited.
  • A. Emad and N. C. Beaulieu, “Lower Bounds to the Performance of Bit Synchronization for Bandwidth Efficient Pulse-Shaping,” IEEE Trans. Commun., vol. 58, pp. 2789-2794, Oct. 2010.
  • A. Emad, W. Dai, and O. Milenkovic, “Protein-Protein Interaction Prediction using Non-Linear Matrix Completion Methods,” 15th Int. Conf. Research Computational Molecular Biology (RECOMB’11), March 2011.
  • A. Emad and N. C. Beaulieu, “Performance of an AFC Loop in the Presence of a Single Interferer in a Fading Channel,” IEEE Trans. Commun., vol. 58, pp. 3386-3391, Dec. 2010.
  • A. Emad and N. C. Beaulieu, “On the Performance of Bit-Synchronizers in an ISI Channel and a Related Lower Bound,” Proc. IEEE Global Commun. Conf. (Globecom’09), Dec. 2009, pp. 1-6.
  • A. Emad and N. C. Beaulieu, “Mean Time to Loss of Lock and Average Switching Rate of an Automatic Frequency Control Loop with an Interferer and Noise in a Fading Channel,” Proc. IEEE Int. Conf. Commun. (ICC’09), June 2009, pp. 1-6.
  • A. Emad and N. C. Beaulieu, “Effect of a Cochannel Interferer on an Automatic Frequency Control Loop in Fading Channels,” Proc. IEEE Wireless Commun. Netw. Conf. (WCNC’09), April 2009, pp. 1-6.
  • A. Emad and N. C. Beaulieu, “Performance Measures of Automatic Frequency Control Corrupted by Interference and Fading in Dual Dissimilar Channels,” Proc. IEEE 69th Veh. Technol. Conf. (VTC’09), April 2009, pp. 1-5.
  • A. Emad and M. B. Shamsollahi, “ECG Denoising Using M-Band Wavelet Transform”, 12th Int. Conf. Biomed. Engin. (ICBME’05), Dec. 2005.